Loading report..

Highlight Samples

Regex mode off

    Rename Samples

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

    Regex mode off

      Show / Hide Samples

      Regex mode off

        Export Plots

        px
        px
        X

        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in multiqc_data when this report was generated.

        Choose Plots

        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Save Settings

        You can save the toolbox settings for this report to the browser.

        Load Settings

        Choose a saved report profile from the dropdown box below:

        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Run Name
        R028
        Run Id
        r54063_20181211_143459
        Instrument
        Sequel 54063
        Run Date
        2018-12-11
        CreatedBy
        slameira

        Report generated on 2020-06-17, 12:03 based on data in:

        Status

        Status first table.

        Showing 3/3 rows and 7/7 columns.
        WellWell Cell NameData SetMovie TimeOrganismKit VersionSMRT Link VersionMetadata Context Id
        1_A01H358_DMSOH358_DMSO-Cell110 hrshomo_sapiens3.06.0m54063_181211_144629
        2_B01H358_DMSOH358_DMSO-Cell210 hrshomo_sapiens3.06.0m54063_181212_010613
        3_C01H358_DMSOH358_DMSO-Cell310 hrshomo_sapiens3.06.0m54063_181212_112538

        Raw Data Report

        Raw Data Report length table.

        Showing 3/3 rows and 9/9 columns.
        WellPolymerase Read BasesPolymerase ReadsPolymerase Read Length (mean)Polymerase Read N50Subread Length (mean)Subread N50Insert N50Insert Length (mean)Unique Molecular Yield
        1_A01
        18764375934
        		490052382917301314122005306525441.04 Gb
        2_B01
        19922339733
        		531633374746957114582058307725911.16 Gb
        3_C01
        21522814217
        		576306373467297414101943308125551.22 Gb

        Adapter Report

        Adapter Report Adapter table.

        Showing 3/3 rows and 3/3 columns.
        WellAdapter Dimers (0-10bp) %Short Inserts (11-100bp) %Local Base Rate
        1_A010.000.00 %
        2.74
        2_B010.000.00 %
        2.74
        3_C010.000.00 %
        2.87

        Control Report

        Control Report Control table.

        Showing 3/3 rows and 4/4 columns.
        WellNumber Of Control ReadsControl Read Length MeanControl Read Concordance MeanControl Read Concordance Mode
        1_A01
        8737
        		376510.870.89
        2_B01
        9479
        		368530.860.89
        3_C01
        10961
        		361240.860.89

        Loading Statistics

        Loading Statistics productivity table.

        Showing 3/3 rows and 7/7 columns.
        WellProductive ZMWsProductivity 0%Productivity 1%Productivity 2%
        1_A01
        1009609
        		22910722.69 %498841.0049.41 %290398.0028.76 %
        2_B01
        1008867
        		16891516.74 %541172.0053.64 %308259.0030.55 %
        3_C01
        1007385
        		15119115.01 %587328.0058.30 %279827.0027.78 %

        Productivity

        Productivity productivity_stat

        loading..

        1 A01

        1 A01 Embedded image 1_A01_mqc.png

        2 B01

        2 B01 Embedded image 2_B01_mqc.png

        3 C01

        3 C01 Embedded image 3_C01_mqc.png

        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.