A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
- Run Name
- R028
- Run Id
- r54063_20181211_143459
- Instrument
- Sequel 54063
- Run Date
- 2018-12-11
- CreatedBy
- slameira
Report generated on 2020-06-17, 12:03 based on data in:
/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/03/4c847702fca7201a0fcaf1f984dd2d/m54063_181211_144629_adapter.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/03/4c847702fca7201a0fcaf1f984dd2d/m54063_181211_144629_control.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/03/4c847702fca7201a0fcaf1f984dd2d/m54063_181211_144629_lengths.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/03/4c847702fca7201a0fcaf1f984dd2d/m54063_181211_144629_loading.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/03/4c847702fca7201a0fcaf1f984dd2d/m54063_181211_144629_overview.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/03/4c847702fca7201a0fcaf1f984dd2d/m54063_181211_144629_productivity.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/03/4c847702fca7201a0fcaf1f984dd2d/m54063_181211_144629_subreads.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/2a/84855dee3ffa394ff7ce88078c4001/m54063_181212_010613_adapter.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/2a/84855dee3ffa394ff7ce88078c4001/m54063_181212_010613_control.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/2a/84855dee3ffa394ff7ce88078c4001/m54063_181212_010613_lengths.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/2a/84855dee3ffa394ff7ce88078c4001/m54063_181212_010613_loading.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/2a/84855dee3ffa394ff7ce88078c4001/m54063_181212_010613_overview.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/2a/84855dee3ffa394ff7ce88078c4001/m54063_181212_010613_productivity.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/2a/84855dee3ffa394ff7ce88078c4001/m54063_181212_010613_subreads.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/75/262947d8cd8e6e1dccc37847cea046/m54063_181212_112538_adapter.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/75/262947d8cd8e6e1dccc37847cea046/m54063_181212_112538_control.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/75/262947d8cd8e6e1dccc37847cea046/m54063_181212_112538_lengths.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/75/262947d8cd8e6e1dccc37847cea046/m54063_181212_112538_loading.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/75/262947d8cd8e6e1dccc37847cea046/m54063_181212_112538_overview.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/75/262947d8cd8e6e1dccc37847cea046/m54063_181212_112538_productivity.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/75/262947d8cd8e6e1dccc37847cea046/m54063_181212_112538_subreads.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/24/65152f88ae2f17603ca7d59af9353a/1_A01_mqc.png/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/72/5458cdd016a0e64f537412f07dd104/2_B01_mqc.png/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/67/85ce0b436598693e2b058354dad386/3_C01_mqc.png
Status
Status first table.
| Well | Well Cell Name | Data Set | Movie Time | Organism | Kit Version | SMRT Link Version | Metadata Context Id |
|---|---|---|---|---|---|---|---|
| 1_A01 | H358_DMSO | H358_DMSO-Cell1 | 10 hrs | homo_sapiens | 3.0 | 6.0 | m54063_181211_144629 |
| 2_B01 | H358_DMSO | H358_DMSO-Cell2 | 10 hrs | homo_sapiens | 3.0 | 6.0 | m54063_181212_010613 |
| 3_C01 | H358_DMSO | H358_DMSO-Cell3 | 10 hrs | homo_sapiens | 3.0 | 6.0 | m54063_181212_112538 |
Raw Data Report
Raw Data Report length table.
| Well | Polymerase Read Bases | Polymerase Reads | Polymerase Read Length (mean) | Polymerase Read N50 | Subread Length (mean) | Subread N50 | Insert N50 | Insert Length (mean) | Unique Molecular Yield |
|---|---|---|---|---|---|---|---|---|---|
| 1_A01 | 18764375934 | 490052 | 38291 | 73013 | 1412 | 2005 | 3065 | 2544 | 1.04 Gb |
| 2_B01 | 19922339733 | 531633 | 37474 | 69571 | 1458 | 2058 | 3077 | 2591 | 1.16 Gb |
| 3_C01 | 21522814217 | 576306 | 37346 | 72974 | 1410 | 1943 | 3081 | 2555 | 1.22 Gb |
Adapter Report
Adapter Report Adapter table.
| Well | Adapter Dimers (0-10bp) % | Short Inserts (11-100bp) % | Local Base Rate |
|---|---|---|---|
| 1_A01 | 0.00 | 0.00 % | 2.74 |
| 2_B01 | 0.00 | 0.00 % | 2.74 |
| 3_C01 | 0.00 | 0.00 % | 2.87 |
Control Report
Control Report Control table.
| Well | Number Of Control Reads | Control Read Length Mean | Control Read Concordance Mean | Control Read Concordance Mode |
|---|---|---|---|---|
| 1_A01 | 8737 | 37651 | 0.87 | 0.89 |
| 2_B01 | 9479 | 36853 | 0.86 | 0.89 |
| 3_C01 | 10961 | 36124 | 0.86 | 0.89 |
Loading Statistics
Loading Statistics productivity table.
| Well | Productive ZMWs | Productivity 0 | % | Productivity 1 | % | Productivity 2 | % |
|---|---|---|---|---|---|---|---|
| 1_A01 | 1009609 | 229107 | 22.69 % | 498841.00 | 49.41 % | 290398.00 | 28.76 % |
| 2_B01 | 1008867 | 168915 | 16.74 % | 541172.00 | 53.64 % | 308259.00 | 30.55 % |
| 3_C01 | 1007385 | 151191 | 15.01 % | 587328.00 | 58.30 % | 279827.00 | 27.78 % |
Productivity
Productivity productivity_stat
1 A01
1 A01 Embedded image 1_A01_mqc.png
2 B01
2 B01 Embedded image 2_B01_mqc.png
3 C01
3 C01 Embedded image 3_C01_mqc.png